Conference Phylogenetics of Heterogeneous Samples 2011 • Lecture Notes in Computer Science • 6674:1-1 Schwartz R
Journal Article Response of an actin filament network model under cyclic stretching through a coarse grained Monte Carlo approach 2011 • Journal of Theoretical Biology • 274(1):109-119 Kang J, Steward RL, Kim Y, Schwartz RS, LeDuc PR, Puskar KM
Journal Article Toward a Unified Model of Molecular Crowding: A Regression Approach to Predict Equilibria and Kinetics of Assembly Systems in Crowded Environments 2011 • Biophysical Journal • 100(3):613a Lee B, LeDuc PR, Schwartz R
Journal Article Towards novel marker discovery from phylogenetic analysis of heterogeneous tumor samples 2011 • Cancer Research • 71: Subramanian A, Shackney S, Schwartz R
Journal Article Unified regression model of binding equilibria in crowded environments 2011 • Scientific Reports • 1: Lee B, LeDuc PR, Schwartz R
Conference A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure 2010 • Lecture Notes in Computer Science • 6053:167-+ Tsai M-C, Blelloch G, Ravi R, Schwartz R
Journal Article A parameter estimation technique for stochastic self-assembly systems and its application to human papillomavirus self-assembly 2010 • Physical Biology • 7(4): Kumar MS, Schwartz R
Journal Article Applying unmixing to gene expression data for tumor phylogeny inference 2010 • BMC Bioinformatics • 11: Schwartz R, Shackney SE
Preprint Approximate Dynamic Programming using Halfspace Queries and Multiscale Monge decomposition 2010 Miller GL, Peng R, Schwartz R, Tsourakakis CE
Preprint CGHTRIMMER: Discretizing noisy Array CGH Data 2010 Tsourakakis CE, Tolliver D, Tsiarli MA, Shackney S, Schwartz R
Journal Article Discrete, continuous, and stochastic models of protein sorting in the Golgi apparatus 2010 • Physical Review E: Statistical, Nonlinear, and Soft Matter Physics • 81(1): Gong H, Guo Y, Linstedt A, Schwartz R
Conference Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-state Phylogeny 2010 • Lecture Notes in Computer Science • 6044:369-+ Misra N, Blelloch G, Ravi R, Schwartz R
Conference RESPONSE OF AN ACTIN FILAMENT NETWORK MODEL UNDER CYCLIC STRETCHING THROUGH A COARSE GRAINED MONTE CARLO APPROACH 2010 • PROCEEDINGS OF THE ASME SUMMER BIOENGINEERING CONFERENCE, 2010 • 375-376 Kang J, Steward RL, Kim Y, Schwartz R, Puskar KM, LeDuc PR
Conference Robust unmixing of tumor states in array comparative genomic hybridization data 2010 • Bioinformatics • 26(12):i106-i114 Tolliver D, Tsourakakis C, Subramanian A, Shackney S, Schwartz R
Conference Simulation Study of Binding Chemistry in Crowded Conditions Using Two- and Three-Dimensional Stochastic Off-Lattice Models 2010 • Biophysical Journal • 98(3):58A-58A Lee B, Leduc PR, Schwartz R
Journal Article THEORY AND ALGORITHMS FOR THE HAPLOTYPE ASSEMBLY PROBLEM 2010 • Communications in Information and Systems • 10(1):23-38 Schwartz R
Conference Tiling Binary Matrices in Haplotyping: Complexity, Models and Algorithms 2010 • PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2010 • 89-102 Lancia G, Rizzi R, Schwartz R
Preprint Generalized Buneman pruning for inferring the most parsimonious multi-state phylogeny 2009 Misra N, Blelloch G, Ravi R, Schwartz R
Conference Multiscale Simulation of Nucleation-limited Viral Capsid Assembly 2009 • Biophysical Journal • 96(3):404A-404A Misra N, Schwartz R
Journal Article Network-Based Inference of Cancer Progression from Microarray Data 2009 • IEEE/ACM Transactions on Computational Biology and Bioinformatics • 6(2):200-212 Park Y, Shackney S, Schwartz R
Conference Parameter Effects Of Crowding On Binding Chemistry Using Stochastic Off-lattice Simulations 2009 • Biophysical Journal • 96(3):85A-85A Lee B, Leduc PR, Schwartz R
Journal Article Parameter effects on binding chemistry in crowded media using a two-dimensional stochastic off-lattice model 2009 • Physical Review E: Statistical, Nonlinear, and Soft Matter Physics • 80(4): Lee B, LeDuc PR, Schwartz R
Journal Article A human genome-wide library of local phylogeny predictions for whole-genome inference problems 2008 • BMC Genomics • 9: Sridhar S, Schwartz R
Chapter Breast Cancer: Expression of HER-2 and Epidermal Growth Factor Receptor as Clinical Markers for Response to Targeted Therapy 2008 • Methods of Cancer Diagnosis, Therapy and Prognosis • 1:459-482 Shackney SE, Emlet DR, Schwartz R, Brown KA, Pollice AA, Smith CA
Journal Article Efficient stochastic sampling of first-passage times with applications to self-assembly simulations 2008 • Journal of Chemical Physics • 129(20): Misra N, Schwartz R
